2024 Hophage github

Hophage github

Author: eiwm

August undefined, 2024

WebContribute to jie-tan/HoPhage development by creating an account on GitHub. Skip to content Toggle navigation. Sign up Product Actions. Automate any workflow Packages. … Web21 aug. 2024 · ① 该研究提出 HoPhage（噬菌体宿主）以从属水平的宏病毒组数据中识别给定的噬菌体片段的宿主；② HoPhage 分别使用深度学习算法和马尔可夫链模型方法， …

The testing strategy for the GM on the VHM dataset

HoPhage is developed by Python. It was released as a Docker image, so you can easily use HoPhage by installing Docker on your local … Meer weergeven The codes of HoPhage are implemented on Python 3.6. To use it, Python 3.6 together with the following packages is required. 1. Python 3.6 1.1. numpy 1.17.4 1.2. pandas … Meer weergeven Before using HoPhage to predict the host of phage fragments, you need to do some data preparation, 1. PPR-MetaPPR-Meta is designed to … Meer weergeven Web13 jul. 2024 · HoPhage achieves 47.90% and 82.47% mean accuracy at the genus and phylum levels for ∼1 kb-long artificial phage fragments when predicting host among 50 … fun weekend trips in washington state

Identify phage hosts from metaviromic short reads based on deep ...

WebGitHub Gist: instantly share code, notes, and snippets. hogehoge. GitHub Gist: instantly share code, notes, and snippets. Skip to content. All gists Back to GitHub Sign in Sign … WebInstantly share code, notes, and snippets. hanamiju / gist:a8963016fa84649961983cfe715a63f3. Created Oct 23, 2024 Web1 jan. 2024 · Summary. We present HoPhage (Host of Phage) to identify the host of a given phage fragment from metavirome data at the genus level. HoPhage integrates two … github jvcl

HoPhage: an ab initio tool for identifying hosts of phage ...

Hophage github

WebGitHub, GitLab or BitBucket URL: * Official code from paper authors Submit ... HoPhage, RaFAH, vHULK, and VPF-Class). Conclusion: HostG outperforms other popular … WebContribute to jie-tan/HoPhage development by creating an account on GitHub. Contribute to jie-tan/HoPhage development by creating an account on GitHub. Skip to contentToggle …

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Web1 mrt. 2024 · HoPhage integrates two modules using the deep learning algorithms and the Markov chain model, respectively. By testing on both the artificial benchmark dataset of … WebThis site uses cookies. By continuing to browse the site you are agreeing to our use of cookies. Find out more

Web3 jan. 2024 · HoPhage integrates two modules using a deep learning algorithm and a Markov chain model, respectively. HoPhage achieves 47.90% and 82.47% mean … Web2 jun. 2024 · GitHub is een bedrijf dat je probeert te helpen om makkelijkere samen met elkaar te kunnen programmeren. Dat doet het bedrijf met het open source programma …

Web12 aug. 2024 · HoPhage integrates two modules using a deep learning algorithm and a Markov chain model, respectively. HoPhage achieves 47.90% and 82.47% mean … WebGitHub is where people build software. More than 94 million people use GitHub to discover, fork, and contribute to over 330 million projects.

Web2 Materials and methods 2.1 Dataset. We download data (including phages, hosts and their interactions) from four widely used databases on March 2024, including MVP [], PhagesDB [], VHDB [] and NCBI [], and merge these data to construct a dataset with more PHIs for our study.The data in these four databases are subjected to the following processing.

Web24 jun. 2024 · Although most existing programs can be applied to metagenomic datasets for these predictions, their accuracies are generally low. Here, we develop ContigNet, a … github just the docsWebContribute to jie-tan/HoPhage development by creating an account on GitHub. github justmeandopensource kubernetesWebYou can use simple features to format your comments and interact with others in issues, pull requests, and wikis on GitHub. Quickstart for writing on GitHub. Learn advanced … github jvedioWebOpen your favorite editor or shell from the app, or jump back to GitHub Desktop from your shell. GitHub Desktop is your springboard for work. Community supported GitHub … fun weekend vacations for familiesWeb22 sep. 2024 · DeepHost applies a convolutional neural network to predict host taxonomies. DeepHost achieves the prediction accuracy of 96.05% at the genus level (72 … github jwashamWebWe tested HostG on both simulated and real sequencing data and compared its performance with other state-of-the-art methods specifcally designed for virus host classification (VHM-net, WIsH, PHP, HoPhage, RaFAH, vHULK, and VPF-Class). fun weekend trips in new yorkWeb24 nov. 2024 · 我们在模拟和真实的测序数据上对HostG进行了测试，并将其性能与其他专为病毒宿主分类设计的最先进的方法 (VHM-net、WIsH、PHP、HoPhage、RaFAH、vHULK和VPF-Class)进行了比较。 HostG的结果优于其他已知的方法，证明了使用基于GCN的半监督学习方法的有效性。同时，HostG的另一个特殊优势是它能够从新的分类群中预测宿主 … fun weekend vacations in the us